PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G005700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 479aa    MW: 52756.5 Da    PI: 6.8474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G005700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.6e-15134222197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k +++s+v +  +l lp  f+++h   k   ++ ++lede+g+  +  +   + +++  l++GW++F+  +g+k+gD+v+F+l++ ++f
  Sevir.5G005700.1.p 134 FVKRMLQSHVVRGFWLGLPTYFCNKHlP-K--DDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIKHGIKVGDVVIFQLVRPTKF 217
                         89************************52.2..3446***************..788877..9***********************987777 PP

                         ..EEEEE CS
                  B3  91 elvvkvf 97 
                           +v ++
  Sevir.5G005700.1.p 218 --KVFII 222
                         ..55555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-19128225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-22129225IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-23132223No hitNo description
SMARTSM010191.0E-14134226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012134225IPR003340B3 DNA binding domain
PfamPF023621.4E-13134223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAIDPPLKRK RGKPPGSESA KSKMEQKMAL VKQRLALLDS ASSSSSSSGE TDKDDDLVPM  60
DDELAIVAAY QPIEIVCGDT GNKDEVIPLK ILASKGVESE KRGLPGQKIS ASYGSAMDRA  120
EEVQAKLPAE HPSFVKRMLQ SHVVRGFWLG LPTYFCNKHL PKDDTGIVLE DENGQDHQTL  180
YLGAKQGLSA GWRGFAIKHG IKVGDVVIFQ LVRPTKFKVF IIRANEFTTT DGAISLLNLE  240
AHKKGKLSKE ECSSDANSKE AEKASAVDHK VPRSDDDNVV FNEAIDGLRI SDSDMDFGDI  300
TSFSNFNIVV DSLVIDCKFH DHLRRTYYEL CCSQNSFLHK NLLKQLNLTL VVGVIMETIS  360
IAEGIRACKA QASSREDLLI WKKTLVSLEL LGMNVGFLLK RINGLLGLTA ESRDLSECQK  420
YRELKSERAR AGEKVKALEL MLSNVKGVLQ KMDAEMEEME SSVKRSGLTL QQLAAAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613LKRKRGKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2828028e-51JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLK3XT320.0K3XT32_SETIT; Uncharacterized protein
STRINGSi005087m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-38B3 family protein